Comments (12)
I'll work on it, and do some comparisons on the results
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Thanks @cookpa . I'm pretty sure that the only use that had was around the time the 2014 cortical thickness paper was written. As far as I'm concerned, we can get rid of it.
from ants.
OK I think we are good to go now, all uses of LabelGeometryImageFilter have been replaced.
from ants.
hmm - this would be a problem for me. @cookpa thickness = Volume / area .... so we compute area on the fly when we need to ... A is the surface area of one side of the sheet.
from ants.
Looks like this is a suggested replacement
https://itk.org/Doxygen/html/classitk_1_1LabelImageToShapeLabelMapFilter.html
from ants.
yes, thx @gdevenyi . @cookpa (or anyone else) do you want to work on replacement or would you like me to?
from ants.
I'm happy to test as I use LabelGeometryMeasures for some work.
from ants.
As well as LabelGeometryMeasures, this filter is used in
ImageSegmentation/antsAtroposSegmentationImageFilter.hxx
Examples/ImageMath_Templates.hxx
Examples/GetConnectedComponentsFeatureImages.cxx
Examples/CreateDTICohort.cxx
from ants.
LabelGeometryImageFilter is used in the undocumented "LabelThickness2" function in ImageMath. It appears to compute average thickness based on the ratio of the volume to perimeter, then replaces the input labels with the average thickness for each label.
@ntustison @stnava do we still need this?
ANTs/Examples/ImageMath_Templates.hxx
Lines 10782 to 10867 in 4c68a48
from ants.
It seems that the pseudo-thickness image from ImageMath LabelThickness2 should be provided by GetConnectedComponentsFeatureImages
- only there's a bug in the latter and it outputs area / volume, not volume / area.
from ants.
I talk about the changes a bit more here
InsightSoftwareConsortium/ITK#4624 (comment)
from ants.
Awesome. Thanks @cookpa.
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