arkadiy-garber Goto Github PK

arkadiy-garber.github.io

astrobiomike.github.io

Site to help biologists wade their way into bioinformatics.

bagoftricks

A collection of python and bash scripts for various bioinformatics-related tasks

bcvn-binder-sortmerna

Lecture and tutorial on wet-lab and in silico approaches to rRNA depletion for RNA seq

binarena

binder-variant-calling

bioconda-recipes

Conda recipes for the bioconda channel.

bioinf_tools

Bioinformatics Tools

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

biovcnet.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

bvcn-binder-antismash

bvcn-binder-fegenie

Two introductory lectures and tutorial on the microbial iron cycle and FeGenie

bvcn-binder-hmmgenie

Learn about how to contribute your own Genie to the MagicCave toolkit

bvcn-binder-htseq

Lesson and tutorial on generating count tables from read-mapping data

bvcn-binder-kegg-koala

Lesson and tutorial on the KEGG database, and annotating with Blast/Ghost/KofamKOALA and KEGGDecoder

bvcn-binder-lesson1

bvcn-binder-magiclamp

Tutorial for the MagicCave toolkit

bvcn-binder-paml

Lesson and tutorial on generating codon alignments and estimating dN/dS using codeml (PAML)

bvcn-binder-pseudofinder

bvcn-binder-trinity

Tutorial on transcriptome assembly using Trinity

bvcn-topic-transcriptomics

A repo for BVCN transcriptomics lessons

cassette-finder

Clustering of gene homologs based on genome coordinates to identify co-occurance of genes within operons and conserved cassettes.

coriolan

A lightweight software to generate phylogenomic trees from unannotated genomes

fegenie

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

findmehemes

Program for identifying and extracting genes with heme-binding motifs from a genome or metagenome/metatranscriptome assembly

gtotree

A user-friendly workflow for phylogenomics

koala-formatter

Script for converting raw KO-number output from GhostKOALA and BlastKOALA into hierarchically-structured CSV format

lithogenie

HMM-based identification and categorization of genes and operons relevant to chemolithoautotrophic metabolisms

lucifer

Identification of light-sensing and light-producing genes in various 'omics datasets

mab

Minima is a one-size-fits-all Jekyll theme for writers.