Comments (2)
arq5x
commented on August 26, 2024
This is solved with commit c57dbc547. Added a gemini.conf file to the installation data directory that stores the location that the user chose to install the annotation files. This config. file is polled at runtime to figure out where to grab the annotation files.
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arq5x
commented on August 26, 2024
This could also serve as a framework for users to drop in their own annotation files for customized analyses. Need to reflect on this for awhile.
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Related Issues (20)
- add dict representation to GeminiRow HOT 4
- nogls-sub-bcolz.t43 test fails
- nogls.t2 test fails
- nogls-sub-bcolz.t14 test fails
- effstring.t03 test fails HOT 1
- cadd.t01 test fails
- Error in GEMINI Download
- Unexpected results when using OR with comp_hets HOT 4
- question regarding sqlite Blob HOT 3
- Documentation v30 HOT 1
- Error installing
- Wrong pysam version in Gemini 0.30.2 ('module' object has no attribute 'VariantRecord') HOT 1
- uninstall script
- on Galaxy platform: ValueError: processing failed on GEMINI chunk load
- Gemini load error with MuTect2 vcf 4.2
- facing traceback and 'syntax error' while running this code - gemini load --cores 3 -t snpEff -v $NORMVCF $db
- Failed fresh installation v0.30.2
- Gemini not found error while loading chunks from VCF HOT 4
- ValueError: Processing failed on GEMINI chunk load HOT 3
- Installation Error
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