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Ashwini's Projects

gatk-docs icon gatk-docs

Documentation archive for GATK tools and workflows

genetech icon genetech

material related to the genetech courses

intro-to-rnaseq-hpc-o2 icon intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

isonclust icon isonclust

De novo clustering of long transcript reads into genes

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

scrnaseq icon scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

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