Missing entry point

[srmeier]

Missing entry point

[J535D165]

And it might be useful to store your results somewhere.

asreview simulate Bos_2018.csv -m nb_example -s state_bos.h5

[srmeier]

Works perfectly, thanks @J535D165 !

[Rensvandeschoot]

Dear @srmeier, thanks for testing this pipeline! Could you upgrade ASReview (+the docker) to the latest version and test again?

[srmeier]

Hi @Rensvandeschoot, Thanks. Updated to latest version but receiving a different error now:

docker run -it --entrypoint=/bin/bash -p 5000:5000 asreview/asreview:latest
cd ~
pip install --upgrade asreview
curl https://raw.githubusercontent.com/asreview/systematic-review-datasets/master/datasets/Bos_2018/output/Bos_2018.csv -o Bos_2018.csv
git clone https://github.com/asreview/template-extension-new-model.git
cd template-extension-new-model/
pip install .
cd ..
asreview simulate Bos_2018.csv -m nb_example

Running into the following:

Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/asreview/utils.py", line 205, in _model_class_from_entry_point
    return entry_points[method].load()
  File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2447, in load
    return self.resolve()
  File "/usr/local/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2453, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "/usr/local/lib/python3.6/site-packages/asreviewcontrib/models/__init__.py", line 1, in <module>
    from asreviewcontrib.models.nb_default_param import NaiveBayesDefaultParamsModel
  File "/usr/local/lib/python3.6/site-packages/asreviewcontrib/models/nb_default_param.py", line 3, in <module>
    from asreview.models.base import BaseTrainModel
ImportError: cannot import name 'BaseTrainModel'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/usr/local/bin/asreview", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.6/site-packages/asreview/__main__.py", line 80, in main
    entry.load()().execute(sys.argv[2:])
  File "/usr/local/lib/python3.6/site-packages/asreview/entry_points/simulate.py", line 47, in execute
    review_simulate(path, **args_dict)
  File "/usr/local/lib/python3.6/site-packages/asreview/review/factory.py", line 330, in review_simulate
    review(dataset, *args, mode='simulate', **kwargs)
  File "/usr/local/lib/python3.6/site-packages/asreview/review/factory.py", line 284, in review
    reviewer = get_reviewer(*args, mode=mode, model=model, **kwargs)
  File "/usr/local/lib/python3.6/site-packages/asreview/review/factory.py", line 204, in get_reviewer
    random_state=random_state)
  File "/usr/local/lib/python3.6/site-packages/asreview/models/classifiers/utils.py", line 63, in get_classifier
    model_class = get_classifier_class(name)
  File "/usr/local/lib/python3.6/site-packages/asreview/models/classifiers/utils.py", line 43, in get_classifier_class
    return _model_class_from_entry_point(name, "asreview.models.classifiers")
  File "/usr/local/lib/python3.6/site-packages/asreview/utils.py", line 212, in _model_class_from_entry_point
    f"Failed to import '{method}' model ({entry_name}) "
ValueError: Failed to import 'nb_example' model (asreview.models.classifiers) with the following error:
cannot import name 'BaseTrainModel'

[J535D165]

Sorry for the inconvenience. It turns out to be an issue with the latest tag of our Docker automated builds. Using the specific tag works (and made a small fix in the template). I will work on a fix.

See the updated code for a working version.

docker run -it --entrypoint=/bin/bash -p 5000:5000 asreview/asreview:release-0.16
cd ~
curl https://raw.githubusercontent.com/asreview/systematic-review-datasets/master/datasets/Bos_2018/output/Bos_2018.csv -o Bos_2018.csv
git clone https://github.com/asreview/template-extension-new-model.git
pip install template-extension-new-model/
asreview algorithms
asreview simulate Bos_2018.csv -m nb_example