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alphafold

Open source code for AlphaFold.

bert

TensorFlow code and pre-trained models for BERT

biodb

Managing biological datasets.

bioman

Biological data manager -- utility python functions for managing complex bio dataset

daily_fudan

一键平安复旦小脚本，自动化快速上报疫情

defense_evo_model

Script and code for manuscript "Interactive effect matters: a combination of herbivory degree and the ratio of generalist to specialist better predicts evolution of plant defense"

demo_repo

R data management tutorial repository

ecobase

Useful databases for ecological studies

emp

Code repository of the Earth Microbiome Project.

empress

Systematic Cophylogeny Reconciliation Tool under Duplication-Transfer-Loss Model.

fastems

faster analsyis of metacommunity structure with NGS data

fudanfreshman

复旦大学研究生新生入学教育自动答题机（基于Python+Selenium）及参考答案

funcom

Fungal communities assocatied with an invasive plant.

funddataclawer

fungimetacom

Codes and data for the manuscript: "The characteristic scales for latitudinal distribution and diversity of fungal endophytes"

grmtm

Gradient-map based template matching algorithm

gtdb-classify

Tools for classifying bacterial and archaeal species with Genome Taxonomy Database.

individual-bat-virome

Codes and data for the manuscript "Wang et al. (2022) The viromes of individual Chiroptera reveal the co-infection, spillover and emergence risk of potential zoonotic viruses"

latitudinal_defense_syndromes

lucaone

The LucaOne’s model code.

lucaprot

LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structure information to predict protein function.

metal

metavscan

A virus scanning pipeline for meta-transcriptomic data

mosquitocalling

Mosquito species calling pipeline

mosquitovirome

ncbi_orffinder

docker image for NCBI_ORFfinder

neea_toefl_automator

自动扫描托福考试空余考位

pet-infectome

Total infectome characterisation of pet dogs and cats in China.

pm25_trial

环境医学综合实验（环境卫生学部分），运动干预与PM2.5诱导的氧化应激反应。

snpgenie_data_prep