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bxd-fasted-gene-expression-bat-microarray-r1858

Generate expression matrix from microarray data derived from BXD brown adipose tissue

bxd-fasted-gene-expression-liver-microarray-r5728

Generate expression matrix from microarray data derived from BXD liver

bxd-fasted-gene-expression-quadriceps-microarray-r1833

Generate expression matrix from microarray data derived from BXD quadriceps

bxd-fasted-gene-expression-scwat-microarray-r5652

Generate expression matrix from microarray data derived from BXD subcutaneous adipose tissue

bxd-microarray-probe-mask

Create microarray probes kill lists for polymorphic targets in the BXD mouse population

dada2_pipeline

A template analysis for the dada2 pipeline

dox-9tb-mouse-metagenomic-analysis-01

Impact of two tetracycline compounds on fecal microbial communities of mice before and after infection with Influenza A virus

elife_gut_paper

Scripts and data used in the paper Genetic and dietary modulators of the inflammatory response in the gastro-intestinal tract of the BXD mouse genetic reference population

ena-utils

A simple CLI toolbox to use the European Nucleotide Archive (ENA)

metabolic_health_cellsystems

movementtracker_software

phewas

Script used in the manuscript

renku-project-template

A repository for default Renku project templates.

renku-r-template

This is a bare R project template that can be directly imported in Renku.

renku-r-tools

A toolbox to work with R projects on Renku

renku-tools

A toolbox to work on renku

renkulab-docker

Jupyter images used by the Renku platform

slims-lisp-python-api

A high-level CLI for Slims REST API

sorrentino_gastrojournal_2020

survival_analysis

A R project for survival analysis based on the R "survival" package.

yildiz_elife_2023

Scripts and data used in the paper "Hepatic lipid overload triggers biliary epithelial cell activation via E2Fs"