avsecz Goto Github PK

avsecz.github.io

My personal blog: Maximum Likelihood http://max-likelihood.com/

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

aws-tensorflow-setup

Install TensorFlow on AWS GPU-instance

bioconda-recipes

Conda recipes for the bioconda channel.

concise

CONCISE (COnvolutional neural Networks for CIS-regulatory Elements)

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.

cookiecutter-pypackage

Cookiecutter template for a Python package.

cookiecutter-r-package

data-science-ipython-notebooks

Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

deepexplain

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability

dl-genomics-exercise

Jupyter notebooks for the system genetics lecture exercise 11 thought at TUM

docker-tox-mongo

Extends the themattrix/docker-tox-base with mongodb 3.4

dotemacs

My emacs configuation.

fitbitr

fitbitr: An R Interface To The Fitbit API

genogam

gin-train

Tracking ML experiments using gin-config, wandb, comet.ml and S3.

hub

Submission to https://pytorch.org/hub/

kipoi_model_zoo_dx

example to run Deep Learning model to predict DNA sequence features with Kipoi with DNAnexus platform

kopt

Hyper-parameter optimization for Keras

manuscript_avsec_bioinformatics_2017

Code for Avsec et al, Bioinformatics 2017

nimnexus

command-line tools for processing ChIP-nexus data

protobuf-json

Protocol Buffers serialization to JSON for python

py-upset

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

pydoc-markdown

Create Python API documentation in Markdown format.

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

readme-template

README.md template for your open-source project

sacredboard

Dashboard for sacred

snakemake-profiles

test_repo

testlfs