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autowrap

Generates Python Extension modules from Cythons PXD files

bioconda-recipes

Conda recipes for the bioconda channel.

build-scripts

Holds the scripts for setting up basic platform specific (but machine independent) environments to build OpenMS for different purposes.

diametalyzer

DIAMetAlyzer nextflow

diametalyzer-app

The OpenMS DIAMetAlyzer metabolomics workflow as web application.

fbmn-stats

A hitchhiker's guide to statistical analysis of non-targeted LC-MS/MS data:

ion-chromatogram-extractor

Extract ion chromatograms from a mzML file and store retention time and intensity values.

masscalculator

metaboigniter

Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.

metabolite-quantifier

openms

The codebase of the OpenMS project

openms-panel-template

openms-streamlit

Streamlit deployment with Traefik and Docker

openms-website

pymetabo

pyopenms-docs

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

pyopenms-workshop

pyOpenMS workshop Metabolomics Pre-Processing

pyopenms_umetaflow

Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)

snakemake_umetaflow

Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

streamlit-deployment

Streamlit deployment with Docker

streamlit-metabolomics-statistics

streamlit-template

targeted-feature-extraction

targeted-swath-gui

Targeted metabolomics project using OpenSwathWorkflow.

thirdparty

External binary dependencies (e.g. search engine binaries) packaged in installers

umetaflow-gui

Graphical user interface for the UmetaFlow pipepline for the analysis of metabolomics LC-MS data.