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arm-workshop-rsc2019

Materials for the rstudio::conf 2019 Advanced R Markdown workshop

autopvs1

An automatic classification tool for PVS1 interpretation of null variants

autospill

R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data

cdseq_r_package

CDSeq R Package

cellr

CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq

cfdr

Implements conditional false-discovery rate hypothesis testing, used to perform high-dimensional hypothesis tests.

cfdr_pipeline

Pipeline to generate all results in manuscript 'Accurate error control in high dimensional association testing using conditional false discovery rates', by James Liley and Chris Wallace

cols4all

Colors for all (R package)

cycombine

Robust Integration of Single-Cell Cytometry Datasets

cytof_analysis_pipeline1

cytonorm_figures

Scripts to replicate the figures reported in the CytofNorm publication.

cytoscape_workflows

collection of notebooks with different cytoscape workflows

data.table

R's data.table package extends data.frame:

dataviz

A book covering the fundamentals of data visualization

debcam

debrowser

Differential Count Data Analysis Toolbox

deconv_benchmark

dge_workshop_salmon

dotfiles

Let's be honest: mostly Emacs.

emacs-from-scratch

An example of a fully custom Emacs configuration developed live on YouTube!

ergo-ii

ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction

flowsom-rtsne-example

Worked example showing how to cluster and visualize flow/mass cytometry data using FlowSOM and Rtsne

flowsom_workshop

Example usage of the FlowSOM package

forestplot

:exclamation: This is a read-only mirror of the CRAN R package repository. forestplot — Advanced Forest Plot Using 'grid' Graphics. Homepage: https://gforge.se/packages/ Report bugs for this package: https://github.com/gforge/forestplot/issues

gsea_r

Updated implementation of the GSEA-P R application for modern R distributions

harmony2019

Reproduce analyses in Harmony Manuscript

here

A simpler way to find your files

hitseekr

An R shiny web application for the analysis of various types of high-throughput screening data

hyprcoloc

Hypothesis prioritisation multi-trait colocalization

imubac

Integration of multi-batch cytometry datasets