error in assign query

[bacpop]

error in assign query

[nickjcroucher]

Hopefully fixed in ca75076.

[nickjcroucher]

You can add the "--microreact" flag (and "--rapidnj") to the --assign-query command when running it with the "--update-db" option.

[nickjcroucher]

Hi - this should be fixed if you add "--distances strain_references/strain_references.dists" to your "--assign-query" command. When updating the database, the distance file also has to be updated accordingly, but we don't check that file is supplied at the moment - I'll change this. Please let us know if this fixes the issue.

[OrsonMM]

Okay, I'll try. Your recommendation.

One question more.

When I finished the assign-query step.
How to generate the.nwk and .csv graphs ?
What command to use ?, in the manual is not very clear. but I guess with --fit-model or --refine-model in my new strain_query folder with the commands --microreact and --rapidj.

:)

[OrsonMM]

thank you so much for all !!!