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Running "mirtk init-dof out.dof -displacements target-landmarks.vtk source-landmarks.vtk" produces an affine transformation. To produce a rigid transformation, just add "-rigid" option. Tested on a pair of landmarks, it produced exactly the same results as prreg. Going to change prreg to mirtk init-dof in the future.
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Ok, forgot the extra option. Glad to hear it gives the same result.
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