Related Issues (20)
- enable filtering by cell ontology and species
- make the autocomplete nicer so they show the ontology type
- user annotation coexpression plot should show a (0,0) sample for selecting this case
- filter studies before fetching data for cross-study view, e.g. filter by tissue
- user prepared study upload
- add CITE-Seq and ATAC-Seq studies HOT 1
- display species in study overview card
- clustering for the rna part of the PBMC citeSeq data set looks wrong although correct in jupyter HOT 1
- user requested gene correlation does not yet work for multiomics
- for generated cell types using the user annotation the generated DEGs are not shown
- log of pvalues = 0 is inf, so they are not shown in volcano plot
- multiple data layers (e.g. another matrix with imputed values)
- user-defined cell annotations: no DEG calculation for multi-omics (h5mu) studies
- study list filter: search for words in title, description; Pubmed ID HOT 1
- small support python package for study preparation
- extend gene IDs, symbols, descriptions with further species
- cross-study heatmap should differentiate "low expression" vs. "cell type not measured at all in this study" HOT 1
- expression plots: option to combine 'equivalent' annotations in one category
- expression plots: show amount of samples next to the boxes / violins
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