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Ben Bolker's Projects

move.hmm icon move.hmm

Flexible, user-friendly Hidden (Semi) Markov Models for animal movement data (Langrock et al. 2012)

mpha_2019 icon mpha_2019

materials for McMaster Public Health Association workshop

nlme icon nlme

BMB's patched branch of nlme SVN

nloptr icon nloptr

nloptr provides an R interface to NLopt, a free/open-source library for nonlinear optimization providing a common interface to a number of different optimization routines which can handle nonlinear constraints and lower and upper bounds for the controls.

numpy-100 icon numpy-100

100 Numpy exercises (70 actually, we need your help...)

occupancy_tmb icon occupancy_tmb

Illustrate how to fit dynamic occupancy model in TMB. Benchmarking vs. ADMB, Unmarked and JAGS.

oop-wg icon oop-wg

Collaboration space for the Object-oriented Programming Working Group

ottawa_mm icon ottawa_mm

materials for Ottawa mixed model workshop, 24-25 Jan 2016

packdep icon packdep

:exclamation: This is a read-only mirror of the CRAN R package repository. packdep — Mapping dependencies among R packages

panelr icon panelr

Regression models and utilities for repeated measures and panel data

phaser icon phaser

Development version of phaseR, an R package for phase plane analysis of one- and two-dimensional autonomous ODE systems

piecewisesem icon piecewisesem

R package implementing piecewise structural equation modeling (SEM)

postmcmcglmm icon postmcmcglmm

R package for post estimation from MCMCglmm. Predicted probabilities from MCMCglmm probit models

powerlmm icon powerlmm

powerlmm R package for power calculations for two- and three-level longitudinal multilevel/linear mixed models.

preddiv icon preddiv

models of predator functional diversity

priors icon priors

general thoughts/advice on priors

pymb icon pymb

Python Model Builder - fit statistical models using algorithmic differentiation

pymer4 icon pymer4

All the convenience of lme4 in python

quebec_2019 icon quebec_2019

materials for nonlinear fitting class, R à Québec 2019

qzmle icon qzmle

maximum likelihood estimation in R/TMB

r-genomics icon r-genomics

Lesson on data analysis and visualization in R for genomics

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