Comments (1)
ToshiDK
commented on June 3, 2024
I want to do a CIRS-seq analysis and I am doing rf-count-genome, but the job is not finished after three days.
”rf-count-genome -m -p 64 -wt 64 -r -o ./XXX -fh -f genome.fa XX.bam”
The outfile has
[+] Making output directory...
[+] Guessing file types:
Sample Type 5'-end trimming Library type
XX BAM Ignored unstranded
[+] Importing chromosomes from reference, and building count table base structure...
[+] Inspecting SAM/BAM file headers...
[+] Assuming that provided SAM/BAM files are already sorted. Skipping sorting...
[+] Calculating per-base mutation counts and coverage. This may take a while...
[-] Processing sample "XXXX" (PID: 26829)
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