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16s-pipeline

usearch based 16S community profiling pipeline for analysis of ribosomal amplicon sequencing & analysis

5g-python-intro

Intro repository for learning python with 5G rna-seq data

5g_deseq2

adme-modeling-for-cargill

A machine learning model to estimate ADMET for non-human targets

air.jl

Light-weight functional collections and utilities for Julia.

alfred

alignment-viewer

a jupyter notebook tool for exploring coverage & mutations in sequence alignments

assembly_and_binning

Metagenomics assembly and binning pipeline for the Beck Research Lab

bacdive_miner

Python based BacDive data miner

bam2orf

Takes a sorted BAM file and a GFF file and reports the # of reads mapped to features and the RPKM (where M is based on only CDS).

barrelseq

Bacteria & archaea, isolate and simple community RNA-Seq analysis pipeline

beto_nlp

Repo for working on the NLP project and will try to keep it neat.

chachies

ci_python_example

Continuous Integration example for Python

cluster_analysis

tools for expression clustering

codebase_github_actions

Example Python codebase with continuous integration using GitHub actions

dashomics

A Visualization Tool to Explore *Omics Data using Unsupervised Machine Learning Techniques

detect_hgt

detect_plasmid

detect_plasmid_reads

Identify plasmid reads from sequencing

diff_transformers

ecsopendata

engines_for_biology

Engines for Biology (e4b) is a MySQL plugin for biologists that includes storage engines and UDFs for working with biological data file format. e4b is good for applications such as complexity filtering.

entropy

example_repo

gains

gb2sql

Genbank to SQL awk based tool

genome_plot

Genome plotter that allows the user to overlay color bars, background coverage plots, differential abundance indicators, eg.

homoganize

Aimed to generate new molecules from multiple data set inputs

homologydocking