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bignmf

A Nonnegative Matrix Factorization algorithm based on alternating least squares and coordinate descent.

bioinfo_course_python

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

combined-pvalues

combining p-values using modified stouffer-liptak for spatially correlated results (probes)

functional-annotation

Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

popstarr2

Pipeline for processing whole-genome Population STARR-seq data

pyflow-chipseq

a snakemake pipeline to process ChIP-seq files from GEO or in-house

rna-seq

RNA-seq analysis

rna-seq-kallisto-sleuth

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

rna-seq-pipeline

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2