ben-heil Goto Github PK

ancestry

program to estimate admixture coefficients from individual genotype or sequence data

ben-heil.github.io

Blog about machine learning, reproducible science, and computational biology

biobert-pytorch

PyTorch Implementation of BioBERT

brd-net

Transfer learning for uncovering the biology underlying rare disease

cis-522-project

cis_522_data

A repo for storing this dataset for easier access: https://www.kaggle.com/lantian773030/pokemonclassification

connectivity-search-manuscript

Manuscript describing Hetnet Connectivity Search

dicom-cnn

Convolutional neural network solution for deep learning from DICOM images

dl_workshop

The materials for the Deep Learning in Biology workshop put on by Alex Lee, David Nicholson, and Ben Heil

gcb536

github_actions_test

Testing a conda github action

groupmescripts

A collection of scripts to analyze information from Groupme group messages

hetio

Hetnets in Python (relocated from dhimmel/hetio)

hetmatpy

Python package for matrix storage and operations on hetnets

hetmech

Matrix-based storage & computation on hetnets to enable a search engine for hetnets

indices

Evaluating citation indices

indices_manuscript

is_texas_back

Mining reddit comments to quantify a meme

linear_models_manuscript

linear_signal

Comparing the performance of linear and nonlinear models in transcriptomic prediction

linuxsetup

Useful files for breaking in a new linux instance

mousiplier-backend

The backend for the Mousiplier web app

mousiplier-frontend

The Mousiplier web app (based on Adage), a tool to explore gene expression data and discover new insights from machine learning models

networkx

Network Analysis in Python

nle

The NetHack Learning Environment

onboarding

Onboarding materials for the Greene Lab

performer-pytorch

An implementation of Performer, a linear attention-based transformer, in Pytorch

phillip

The SSBM "Phillip" AI.

philly-covid-stats

A streamlit app visualizing Philly's public COVID data

pkg-manager-review

Manubot Repo for Package Manager Review Paper