jobTree support for argparse

[benedictpaten]

jobTree support for argparse

[benedictpaten]

Be my guest..

On Fri, Nov 2, 2012 at 10:58 AM, Dent Earl [email protected] wrote:

optparse http://docs.python.org/2/library/optparse.html is deprecated,
argparse http://docs.python.org/2/library/argparse.html#module-argparseis the replacement. This can be patched by checking the .class of the
input in the addOptions() function contained in jobTree.src.jobTreeRun BUT
will also need to be changed in sonLib.bioio addLoggingOptions(). I think
the way jobTree and sonLib have used optparse is generic enough that the
transition would be transparent to script writers.

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[dentearl]

Changes applied in jobTree commit 33c4def and sonLib commit 995fdccf65cce7180899f2dbe1a966dcb6b2ba13. Closing.