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awesome-workflow

An awesome list of workflow systems

bentsherman.github.io

My digital garden

cautious-journey

codeflow

Flow graphs for your code

cuhackit2020

Jupyter notebook for Intro to Python workshop

fetchngs2rnaseq

Meta-pipeline for nf-core/fetchngs -> nf-core/rnaseq

gemmaker

A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

kinc-sketches

Experimental implementations of KINC in various languages and programming models

ledger

A simple web-app to manage credits and debts among peers

libgmm

GPU Accelerated Expectation Maximization for Gaussian Mixture Models using CUDA

minecraft-server

A simple cloud-based wrapper for a Minecraft server with process management

minibench

Nextflow pipeline for lightweight benchmarking

ml-toolkit

A collection of command-line wrappers of Python libraries for machine learning tasks

nextflow-gcloud-docker

nextflow-palmetto-demo

Creating and running Nextflow pipelines on Clemson's Palmetto cluster

nf-boost

Experimental features for Nextflow

nf-float

MemVerge Netflow Plugin

nf-head-job-benchmark

Nextflow pipeline to benchmark Nextflow resource usage

nf-report

Nextflow plugin for generating an example report for workflow runs

nf-tests

Nextflow tests

nn-arch-tester

Python scripts for experimenting with neural net architectures

open-pixel-art

A collaborative pixel art project to teach people how to contribute to open-source

openmw

OpenMW is an unofficial open source engine reimplementation of the game Morrowind.

pbs-toolkit

A collection of user scripts for a PBS/Tmod environment

raytracer

Basic implementation of a ray tracer

risk

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sc18-demo

sonn-tester

Python scripts for experimenting with self-organizing networks

sudoku