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arch-wsl-rootfs

This is repo for extracting rootfs from archlinux docker image with a few additional packages installed and few configuration changes.

assets

bfg2020

bioconda-recipes

Conda recipes for the bioconda channel.

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

chipseq

Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.

chm13

The complete sequence of a human genome

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

condax

Install and run applications packaged with conda in isolated environments

containerize-conda

Turn an existing conda environment into a Docker or Singularity container

crssant

Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)

datasciencecoursera

datasciencecoursera_assignment4

Assignment of "Getting and Cleaning Data" course from Coursera JHU Data Science specialization

datasharing

The Leek group guide to data sharing

deeptools

Tools to process and analyze deep sequencing data.

dotfiles

Dotfiles managed with a git bare repo

ea-utils

Automatically exported from code.google.com/p/ea-utils

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

gget

🧬 gget enables efficient querying of genomic databases and software, such as Ensembl and AlphaFold, directly into a Python or terminal programming environment.

irescue

A tool to quantify transposable elements expression in scRNA-seq

irkernel-hpc

Jupyter R kernel from a container, designed for working on a jupyterhub server/HPC

itlinux-win-keyboard

An Italian keyboard layout for Windows, customized with shortcuts from Linux systems

jupyterext-text-shortcuts

A Jupyter Lab extension for keyboard text shortcuts

kickstart.nvim

A launch point for your personal nvim configuration

micromamba-docker

Rapid builds of small Conda-based containers using micromamba.

misc

Miscellaneous bioinformatics utilities

moderncv

A modern curriculum vitae class for LaTeX

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mppysam

Multiprocessing functionality with pysam

nanoseq

Nanopore demultiplexing, QC and alignment pipeline