bids-apps Goto Github PK

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aa

BIDS App containing an instance of the Automatic Analysis

afni_proc

prototype AFNI bids app implmenting participant level preprocessing with afni_proc.py

antscorticalthickness

BIDS App for calculating cortical thickness using ANTs

baracus

Predicts brain age, based on data from Freesurfer 5.3

base_fsl

base_validator

bids-apps.github.io

Portable neuroimaging pipelines that understand BIDS datasets

brainiak-srm

This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK

brainsautoworkup

brainsuite

BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

broccoli

BIDS App for BROCCOLI

cpac

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

dockerfile-templates

Dockerfile templates commonly used in BIDS Apps

dparsf

Docker version of DPARSF, also deployed at OpenNeuro.org

example

This an example app that can serve as a template.

fibredensityandcrosssection

fmriprep

This repository has moved to https://github.com/poldracklab/fmriprep

freesurfer

BIDS app wrapping recon-all from FreeSurfer

giga_connectome

generate connectome from fMRIPrep outputs

hcppipelines

A BIDS App for minimal preprocessing using the HCP Pipelines

hyperalignment

Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

magetbrain

maintenance-tools

matlab-compiler-runtime

Base image with Matlab Compiler Runtime (MCR)

mindboggle

Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data

mriqc

This repository has moved to https://github.com/poldracklab/mriqc

mrtrix3_connectome

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

ndmg

BIDS app for NeuroData's MRI to Graphs pipeline

niak

Pipeline for preprocessing of fMRI and structural MRI scans