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2019_puller_sitespecificgtr

80_genomes

code for analyzing loss and gain of a gene among many genomes

arcs

🌈Scaffold genome sequence assemblies using 10x Genomics data

atac-seq

augustus

augustus2

awesome-hacking

A collection of various awesome lists for hackers, pentesters and security researchers

awesome-python

A curated list of awesome Python frameworks, libraries, software and resources

bamdeal

BamDeal: a comprehensive toolkit for bam manipulation

bhmm

Bayesian hidden Markov models toolkit

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

biocode

Bioinformatics code libraries and scripts

bioext

A few handy bioinformatics tools not already within BioPython

bioinformatics

Repository for student project

bioinformatics-1

Homework 3

bioinformatics-2

Assignments of Bioinformatics Lab

brainzoo

Scripts used in brain mCH manuscript

bsseeker2

A versatile aligning pipeline for bisulfite sequencing data

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

chipseeker

:dart: ChIP peak Annotation, Comparison and Visualization

clustcompare

Pipeline to compare secondary metabolite biosynthetic gene clusters (BGCs)

cnefinder

CNEFinder: Finding Conserved Non-coding Elements in Genomes

coalescent-theory

NOT FREE SOFTWARE UNTIL AFTER MAY

coalescent-trees

Simulates coalescent trees, DNA sequences within it, reconstructing them and inferring a posterior distribution of the effective population size.

codeml

Machine learning trainigs and code

codemlz

Modified version of codeml that can estimate eta under codon model.

convcal

Python scripts for calculation of expected number of convergence in Zou and Zhang 2015

convergentevolution-1.0