Comments (3)
Missing dependencies:
- guava (needs version 22, but we only have 20)
- la4j 0.5.5
- biojava-core 4.0.0
- biojava-alignment 4.0.0
- jdistlib
- slf4j-log4j12-1.7.22
- simple-xml-2.0.4
from pigx_scrnaseq.
Packaged for Guix, but with bundled jars.
from pigx_scrnaseq.
I successfully built all dependencies from source. I did not upgrade guava because it's really difficult. Looks like version 20 works just fine. I'll submit patches to Guix today for adding the dropseq tools to Guix upstream.
from pigx_scrnaseq.
Related Issues (20)
- check whether the output directory is writeable
- Provide Seurat object as output HOT 3
- Verbosely describe how to contribute
- Settings parsing - more descriptive error messages
- check whether the genome is defined
- Rename slots in single cell experiment to standardly used names
- Add number of cells per experiment to the report
- FastqToSAM complains if header contains barcode
- Replace dropseqtools with STAR solo HOT 1
- environment.yml file missing for conda installation HOT 1
- Add whitelist option to the pipeline
- r-argparse should be checked by configure.ac
- Pipeline dies on sort bam step if tmp files exist
- STAR breaks mm Matrix format for Velocyto output
- loom2sce should be called only once
- Local pipeline install fails during convert_matrix_from_mtx_to_loom.py HOT 3
- check for corresponding chromosome names in GTF and fasta
- convert_matrix_from_mtx_to_loom:102 - ValueError: Length mismatch: Expected axis has 3 elements, new values have 2 elements
- new version of star will break the pipeline
- m4/ax_r_package.m4 is outdated
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pigx_scrnaseq.