bio-lijs Goto Github PK

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

bioinfo_leetcode

让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

cooler

A cool place to store your Hi-C

crane-nature-2015

code associated with crane-nature-2015, 10.1038/nature14450

fanqiang

翻墙-科学上网

forbeginners

帮助初学者快速入门生物信息学必备技能的网络资源

guideline-for-computational-biology-and-bioinformatics

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hic-spector

Spectral and reproducibility analysis of Hi-C contact maps

hicexplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

higlass

Fast large scale matrix visualization for the web.

higlass-docker

Builds a docker container wrapping higlass-server and higlass-client in nginx

intro-to-chipseq

Intro to ChIPseq using HPC

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

kas-pipe2

Toolkits to process and analyze KAS-seq and spKAS-seq data.

macs

MACS -- Model-based Analysis of ChIP-Seq

matplotlib-cn

matplotlib中文文档

ngs_learning

生物信息学交流资料

pairtools

CLI tools to process mapped Hi-C data

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

r-language-beginner

statistics_python_codes

《统计学原理实验教程（Python）》书中代码实现。尽可能加注释，力求代码的可复用性。

topdom

TopDom is a software tool to ideintify Topological Domains, which are basic builiding blocks of genome structrue. TopDom is computationally very efficient. Using detecting optimal polygon algorithm, TopDom detect topological domains in a linear time. As well as, this tool requires only a single parameter, which enable user to use easily.

ysx