Comments (3)
Problem solved, but keep in mind this library needs 2 other packages which are not frequently used and users should install it in advance.
as I am working on Conda env. I leave the instruction below to install those libs. for anybody who faced the same problem.
conda install -c conda-forge/label/cf201901 r-tinytex
conda install -c biobuilds r-stringi
also its better to use force= TRUE in this one.
BiocManager::install("Bioconductor/OSCABase", subdir = "package" ,force=TRUE)
Appreciate it and thank you for replying appropriately.
from orchestratingsinglecellanalysis.
Hi
The OSCAUtils
package is distributed as a subfolder of this repository, see:
https://github.com/Bioconductor/OSCABase/tree/master/package
See the DESCRIPTION
file in that folder that declares the package name: https://github.com/Bioconductor/OSCABase/blob/master/package/DESCRIPTION#L1
To install OSCAUtils
, any of the following should work:
BiocManager::install("Bioconductor/OSCABase", subdir = "package")
devtools::install_github("Bioconductor/OSCABase", subdir = "package")
from orchestratingsinglecellanalysis.
I'm kind of bemused about why you need to install OSCAUtils. This is a package that is literally only required to build the book, not to run any of the analysis code in the book.
I mean, if you want to use it, that's cool and all, but don't expect it to be stable.
from orchestratingsinglecellanalysis.
Related Issues (20)
- Clean up the multi-sample comparisons chapter HOT 1
- Follow the best practices of Bioconductor containers HOT 1
- Need to add some words about the ARI HOT 1
- Add the Messmer example for scPCA HOT 1
- Fix the custom methods for marker detection section
- aggregateAcrossCells after fastMNN HOT 1
- Fixes to CITE-seq QC section HOT 1
- Clean up the introduction section
- Guideline to contribute? HOT 3
- Use scDblFinder HOT 7
- An error occurs when removing swapped molecules HOT 5
- Question about licensing and derivatives HOT 2
- can not download LunSpikeInData HOT 10
- Tagged release OSCA docker images HOT 3
- Single cell analysis HOT 1
- any(seqnames(location)=="MT") question HOT 2
- Hello, I'd like to ask you a question. HOT 2
- DEGs between two scRNA-seq datasets HOT 6
- Problem in downloading LunSpikeInData HOT 7
- Typo on Chapter 9.2 PCA, runPCA(..., BSPARAM=RandomParam(), name='') HOT 5
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from orchestratingsinglecellanalysis.