Comments (2)
josenavas
commented on August 15, 2024
Suggest redirecting to Qiime - we will not be able to call QIIME internally due to dependency conflicts and I don't think it is useful to re-invent the wheel if there is already a script in Qiime that does that. Once that script is available in QIIME2 and deblur is also there it should be simpler to explain the pipeline (note that this is similar as split libraries, so it is just another step that we can link at the end)
from deblur.
wasade
commented on August 15, 2024
Agree with @josenavas, taxonomy assignment is a logically distinct issue resolved in other packages
from deblur.
Related Issues (20)
- new release: mix case fixing HOT 1
- illumina 1.9 support? HOT 1
- convert float to int HOT 3
- Failure to write BIOM file - OSError: Unable to create file HOT 1
- Deblur workflow output HOT 14
- Indels aren't calculated correctly HOT 6
- Derivation of error profile HOT 2
- Is it possible to turn off chimera checking? HOT 4
- Not sure where counts are going for dominant sequence HOT 1
- "ERROR ...: Problem running vsearch dereplication on file" HOT 1
- bug Mac, error message HOT 1
- Whether deblur trim the read length with multipile sequence alignment? HOT 9
- Crash after saving biom table and attempting to remove artifacts
- Novaseq support HOT 1
- Is there an equivalent deblur-stats output in the stand alone version? HOT 4
- Can you recommend some reference databases (Positive mode) for ITS and 18S sequences? HOT 8
- Question about using Deblur in meta analysis HOT 1
- Deblur installation error HOT 5
- support click 8
- indexdb_rna not found HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from deblur.