biocq Goto Github PK

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activedriverwgsr

ActiveDriverWGSR is an R package for discovery of cancer driver genes and non-coding elements in whole genome sequencing data

agplus

a rapid and flexible tool for aggregation plots

alpud

ALPUD: Active Learning from Positive and Unlabeled Data

asb-backend

asb-frontend

awesome-semi-supervised-learning

:scroll: An up-to-date & curated list of awesome semi-supervised learning papers, methods & resources.

biocode

Bioinformatics code libraries and scripts

bioinfo-notebooks

python implementations of bioinformatics algorithms to solve Rosalind problems

bioinformatics-algorithms

Implementations of bioinformatics algorithms in Python

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

cancerlocator

A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.

cancermine

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer

chalm

Cell Heterogeneity Accounted cLonal Methylation (CHALM)

changepoint_dectection

cis-x

Search for activating regulatory variants in the tumor genome

clash-rules

🦄️ 🎃 👻 Clash Premium 规则集(RULE-SET)，兼容 ClashX Pro、Clash for Windows 客户端。

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

datascience

workshop for data science

deepmel

depmap-analysis

This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"

dicdat

dom2vec

dom2vec: Protein domain embeddings

dorge

Tumor suppressor and oncogene prediction

dorge_codes

Codes for reproducible purposes

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

eg-react

WashU Epigenome Browser

emase

Expectation-Maximization algorithm for Allele-Specific Expression

emogi

An explainable multi-omics graph integration method based on graph convolutional networks to predict cancer genes.

epifactors_webapp

Web-site for EpiFactors database of epigenetic factors, corresponding genes and products.