biodata-club Goto Github PK

biodata-club.github.io

BioData Club website and project management

biodataintrodatavizslides

Slides for Intro to Data Viz workshop

data_donuts_af_am_history

data_storytelling_bdc

Data Storytelling Workshop for BioData Club

datadonutsjeffleek

Repository for discussing How to be a modern scientist

diy-documentation

A BioData Club Workshop on Markdown and Read the Docs.

friendly-intro-to-r

Danielle and Lilly teach a v friendly intro to R and R Studio.

ghpages-rtd

The ReadTheDocs version of the BioData Club's GitHub Pages Tutorial

githubpagestutorial

Tutorial on Setting Up a Github Page

gradual_shiny

Workshop introducing Shiny programming concepts

introduction-git

marp slides and material for git talk

jekyll-academic

Live GitHub Page at

latex-course

An interactive introduction to LaTeX using Overleaf.

logregression-workshop

In biomedical research we often wish to classify data into two or more groups (eg. healthy and diseased) based on a variety of measurement variables, but how do you determine if the model you’ve selected is good? In this BioData Club workshop instructor Crista Moreno will discuss the mathematics of logistic regression for binary classification modeling, and how to prevent the harms of overfitting with cross validation in R. Attendees will gain knowledge through hands-on exercises about the following concepts and data science skills. Logistic regression (logit function, probability, binary classification) Overfitting (adding parameters and high dimensional spaces) Cross validation Cross validation Error R (R markdown, R packages magrittr, dplyr, ggplot2, tidyr, corrplot, caret, rgl) Anyone with interest in building a classification model for biomedical data is encouraged to attend! Prior experience with R, Rstudio, and a basic knowledge of classification modeling (also mathematical functions) will be helpful, but is not a requirement.

my-first-rtd

A sample repository for use in the BioData Club DIY Documentation Workshop

nhanes_explore

Shiny App for Exploring the NHANES dataset

obo-tutorial

A tutorial on using Open Biological and Biomedical Ontologies (OBO) to create better biodata

programming-fundamentals

Programming fundamentals lesson based on the Software Carpentry Programming with Python lesson.

sql_workshop

tableauworkshop

Repository for Tableau Workshop at OHSU

webscraping_workshop

A Jupyter Notebook-based workshop on web scraping in python

workshop_reproduciblepaper

A Practical Guide to Reproducible Papers