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biodatageeks's Projects

cannoli icon cannoli

Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.

coitrees icon coitrees

A very fast interval tree data structure

cwl-airflow icon cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

disq icon disq

A library for manipulating bioinformatics sequencing formats in Apache Spark

hadoop-bam icon hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

iitii icon iitii

Implicit Interval Tree with Interpolation Index

pysequila icon pysequila

Python wrapper for SeQuiLa: Distributed analytics for genomics based on Apache Spark!

rnafusion icon rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rust-bio icon rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

sequila icon sequila

SeQuiLa: Distributed analytics for genomics based on Apache Spark!

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