Comments (5)
constantinpape
commented on June 19, 2024
@FynnBe I think it would be good to work on this (at least first 4 points) before releasing this library. I can work on the pre/post-processing things next. And we can maybe discuss how to split the other things in the bioimage.io meeting.
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constantinpape
commented on June 19, 2024
Support for multiple tensors has been implemented in #103 and #104 and the output_dtype is not relevant any more since prediction_pipeline has output_specs now.
@FynnBe do you want to tackle fixed shapes next? You can use this model for tests.
Also, do you want to work on removing the attributes that duplicate stuff from input/output spec in prediction_pipeline? I think it would be good to also simplify that part before the release.
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FynnBe
commented on June 19, 2024
Yes and yes 👍
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FynnBe
commented on June 19, 2024
Also, do you want to work on removing the attributes that duplicate stuff from input/output spec in prediction_pipeline? I think it would be good to also simplify that part before the release.
simplified in #106
we could take it a step further and remove crreate_prepdiction_pipeline and use its __init__ instead, as it's rather trivial now.
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FynnBe
commented on June 19, 2024
@FynnBe do you want to tackle fixed shapes next? You can use this model for tests.
fixed shapes PR: #105
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Related Issues (20)
- validate (citation) dois
- VALUE is not a is not a valid RESUNIT HOT 12
- Better default io names in build_model() HOT 12
- Implement sha256 check for the model
- MONAI translation to BioImage format HOT 1
- Image normalization causing test_model test failure HOT 3
- Provide our CI testing environment as docker containers
- Reproducibility test for model creation fails HOT 3
- Hackathon 2023/10 notes HOT 2
- programmatic access for datasets
- Add support for release candidates and automatic mail updates
- developer documentation
- Investigate integration of aicsimageio
- Add/improve weight converters
- Loading model resource gives assertion error HOT 2
- Link in example broken HOT 1
- Running `test_model` raises TypeError: list indices must be integers or slices, not str HOT 1
- Improve weights conversion to ONNX HOT 1
- bug when `add_deepimagej_config=True` in `build_model` HOT 5
- Error when importing HOT 2
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