bioinfo-pf-curie Goto Github PK

3-smart

Pipeline for 3'-seq analysis

4geniac

Docker containers for geniac

5c-pro

Pipeline for single-end 5C processing

annotationmaker

Build indexes and annotation files for Nextflow pipelines

as-mapping

Nextflow pipeline for Allele-specific analysis

atac-seq

Nextflow pipeline for ATAC-seq data analysis

biogitflow

Development worklow protocols for bioinformatics pipelines with git and gitlab

bioinfo-pf-curie.github.io

bioshiny-modules-library

R package containing modules for an easier Shiny Apps development

chip-seq

Nextflow pipeline for ChIP-seq data quality controls and analysis

clintools

Utilities for NGS clinical analysis

clip-seq

This pipeline was set up to process CLIP-seq data from aligned sequencing reads. It includes two parts: i/the reads processing (cleaning, mapping, peak calling) and the differential analysis.

cookiecrispr

Shiny R package for CRISPR screen analysis

emtiron

Data analysis project of the study "CD44 regulates cellular plasticity by mediating iron endocytosis". Müller, Sindikubwabo et al. 2019

geniac

Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for the development of bioinformatics analysis pipelines with nextflow

geniac-demo

This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).

geniac-demo-dsl2

This is a demo pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow DSL2 and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).

geniac-template

This is a template to pipeline with the best practises for the development of bioinformatics analysis pipelines with nextflow and geniac (Automatic Configuration GENerator and Installer for nextflow pipeline).

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hitc

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/HiTC.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=HiTC.

mdmmetals

Data analysis from Solier et al.

mpibwa

mpimarkdup

mpisort

myproms

Mass spectrometry-based proteomics data management and analysis software

myproms-doc

myProMS documentation

nf-core-hic

Analysis of Chromosome Conformation Capture data (Hi-C)

nf-crispr

Nextflow pipeline for CRISPR screen processing

nf-vif

A Nextflow-based Virus Insertion Finder

pacbiorunqc