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bjclavijo avatar bjclavijo commented on August 12, 2024

Sorry about the delay. Not sure if you're still interested in this, but if 1.6B reads worked maybe just leave it at that, I would say. Some of the heuristics were never update to use large coverages on larger genomes, so anything higher than 100x coverage is pushing it too far in these scenarios as there's a few hardcoded thresholds.

I can't really think top of my mind what could be going wrong but I would bet some threshold is letting way too many elements join a collection that then overflows. If you really need this looked at, I would say run it on GDB and let us know where the overflow is happening. Otherwise, I will just close this in a few days.

from w2rap-contigger.

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