bioinfonerd-forks Goto Github PK

alibi

Algorithms for monitoring and explaining machine learning models

amazon-genomics-cli

analysis-workflows

Portable workflow definitions for genomic analysis from MGI at WUSM.

angel

Robust Open Reading Frame prediction (ANGLE re-implementation)

arseq

An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)

ashlar

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-for-beginners

A list of awesome beginners-friendly projects.

awesome-nextflow

A curated list of nextflow based pipelines

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

batchtmadearray

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bio

Bioinformatic infrastructure libraries

biocworkshops

Workshops for learning Bioconductor

biodatamining

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

cellfishing.jl

Fast and scalable cell search tool

cheatsheets

Official Matplotlib cheat sheets

chromeqc

ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

cicero

clean-code-javascript

:bathtub: Clean Code concepts adapted for JavaScript

clusterexperiment

R package of techniques for comparing clusterings of single-cell sequencing data

complete-striped-smith-waterman-library

composer

Visual and code editor for Common Workflow Language

cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

cwltool

Common Workflow Language reference implementation

cycif

Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

deconvolution2016

Code and manuscript files for Aaron and Karsten's deconvolution paper.

docker