GPI Parsing fails on zfin.gpi

[biolink]

GPI Parsing fails on zfin.gpi

[kltm]

@sierra-moxon It should just be the python biolink/ontobio package: https://github.com/biolink/ontobio

[dougli1sqrd]

So I ran goa_chicken_complex.gpi.zip using the same test, and this completes succesfully. This makes me think the zfin.gpi is off.

[kltm]

I'll pop over and we can take a look at them.

[sierra-moxon]

Is there a way I can run the validator myself? thanks,Sierra (@ZFIN).

[kltm]

re #86

[dougli1sqrd]

Not an easy way as of yet. I can try and make that happen through the command line next.

[kltm]

@dougli1sqrd your code above already does this, right?
#85 (comment)

[dougli1sqrd]

@kltm @sierra-moxon Yeah it's true. If you copy that code into a file in ontobio, making sure to import those classes you could run it. But we will want a real command line entry into this. I'm working now to produce a command line entry point to this.

[cmungall]

Additionally, once registered we run a 'snapshot' dry-run release every day, so you'd get fast feedback that way.

…

On 25 Jul 2017, at 16:47, dougli1sqrd wrote: @kltm @sierra-moxon Yeah it's true. If you copy that code into a file in ontobio, making sure to import those classes you could run it. But we will want a real command line entry into this. I'm working now to produce a command line entry point to this. -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: #85 (comment)

[cmungall]

@dougli1sqrd any reason @sierra-moxon cannot just run ontobio-parse-assocs.py?