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jundu's Projects

arriba icon arriba

Fast and accurate gene fusion detection from RNA-Seq data

d2l-en icon d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.

gatk icon gatk

Official code repository for GATK versions 4 and up

mity icon mity

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

python icon python

All Algorithms implemented in Python

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

tidy-text-mining icon tidy-text-mining

Manuscript of the book "Tidy Text Mining with R" by Julia Silge and David Robinson

tidymodels icon tidymodels

Easily install and load the tidymodels packages

tidyquant icon tidyquant

Bringing financial analysis to the tidyverse

tidytext icon tidytext

Text mining using tidy tools :sparkles::page_facing_up::sparkles:

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