biosustain Goto Github PK

.github

2016-09-05-software-carpentry

2017-09-18-software-carpentry

2018-09-10-software-carpentry

2019-08-26-software-carpentry

https://biosustain.github.io/2019-08-26-software-carpentry/

aiida-core

The official repository for the AiiDA code

analyticstools

Big Data Omics handling for campaign and autonomous science

ancestry

AngularJS module with interactive lineage chart components based on D3.js

apoptosis

Data and code related to the draft paper "Modelling Classical Apoptosis Resistance in CHO cells with CRISPR-Mediated Knock-outs of BAK1, BAX, and BOK Reveals both delayed onset and decreased rates of cell death".

autoflow-htc

AutoFlow High Throughput Cultivation

autoprot

The autoprot pipeline allows for absolute quantification of proteins from raw mass-spectrometry files in an automated manner.

azure-storage-azcopy

The new Azure Storage data transfer utility - AzCopy v10

bayesian_statistics_for_computational_biology

A Bayesian statistics course for computational biologists

cameo

cameo - computer aided metabolic engineering & optimization

cameo-notebooks

Example notebooks for Cameo

cell-factory-design-course

https://biosustain.github.io/cell-factory-design-course/

cfb

cfb_rnaseq_prokaryote

chemical-tolerance-supplementary

cmfa

Compositional Metabolic Flux analysis

co

Make mutated copies of DNA components in BioPython

co2_fixation_models

Process optimization by combining temperature-dependent mass transfer and metabolic models.

code-quality-check

component-contribution

Standard reaction Gibbs energy estimation for biochemical reactions

consortia_synthetic_anaerobe

Supporting material for "CRISPRi-mediated metabolic switch enables concurrent aerobic and synthetic anaerobic fermentations in engineered consortium" manuscript

croissance

Tool for estimating growth rates from microbial growth curves

data_club

dgfreg

Regression models of biochemical formation energies

dsp_nf-metagenomics

Shotgun metagenomics pipeline to process microbiome samples

ecolikineticbenchmark

This repository contains code to replicate study-benchmark of published E. coli kinetic metabolic models