biov Goto Github PK

2020-august-advanced-scrnaseq

Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.

500lines

500 Lines or Less

agedbrain

Code and files for reproducing the analysis presented in "Neuropathological and transcriptomic characteristics of the aged brain," the platform paper for the Aging, Dementia, and TBI Study.

amp_phase1_ra

:ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

awesome-expression-browser

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bcbiosinglecell

R package for bcbio single-cell RNA-seq analysis.

biocstickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

bookdown-demo

A minimal book example using bookdown

broom

Convert statistical analysis objects from R into tidy format

brspdata

Allen Institute BrainSpan Exon and Gene Expression Values

cheatsheets

RStudio Cheat Sheets

clusterfinder

Predicting biosynthetic gene clusters in genomes

commondatasets

course_rna-seq2019

d3heatmap

A D3.js-based heatmap htmlwidget for R

dashboarding-tutorial

Presentation, pro tips, and tools for dashboarding like a boss: https://maloriejhughes.github.io/Dashboarding-Tutorial/

data-analysis

金融市场与体育彩券市场 --- 数据分析与量化交易

data-science-in-tidyverse

Materials for Data Science in the Tidyverse, a two-day workshop @ rstudio:conf(2019)

data-science-in-tidyverse-1

Data Science in the tidyverse, a two-day workshop @ rstudio:conf(2018)

devmeth450k

Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"

devrhesuslmd

dge_workshop

firsttest

For test only

genome-wide-changes-in-lncrna-alternative-splicing-and-cortical-patterning-in-autism

Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016

ggplot2_workshop

Material for "Drawing Anything with ggplot2" workshop

ggrepel

:round_pushpin: Repel overlapping text labels away from each other.

harmony

Scalable integration of single cell RNAseq data for batch correction and meta analysis

heatmaply

Interactive Heat Maps for R Using plotly