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Ben Iovino's Projects

dctdomain icon dctdomain

Homology detection using DCT representations of proteins

dctsearch icon dctsearch

Command-line tool for protein database searching using ESM-2 embeddings and contact maps

glycn icon glycn

1D-CNN built with PyTorch to predict glycosylation of embedded asparagine residues

runlog icon runlog

Tool for logging and tracking runs

runsqlight icon runsqlight

Application to log and view your runs via SQLight database

searchemb icon searchemb

Searching proteins against a database of embeddings

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

vecaligns icon vecaligns

Using the similarity between embedded protein sequences to align them

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