bishop-laboratory Goto Github PK

autoplier

R port of autoplier

autoplier-analysis

Analysis for the autoPLIER project

bioconda-recipes

Conda recipes for the bioconda channel.

bishoplab_hts_pipeline

Pipeline for automation of common HTS analysis tasks (e.g., RNA-Seq alignment)

cell-compass

correlationanalyzer

Generate Novel Insights from Gene Correlation Data

correlationanalyzer-shinyapp

A web application interface for correlationAnalyzeR

ewing_sarcoma_miller_cancers_2020

Scripts and data for reproducing analysis in Miller et al. 2020

fibrodb

Explore RNA-Sequencing results in fibroblast tissues

getsysreqs

Determine system requirements from R packages using the RStudio Package Manager. This is a weekend project, not a real package, so please think twice before using it for anything serious.

liverdb

onto_lib

Tools for loading and manipulating ontologies in Python

ra-eval

Task for evaluating skill level of Bioinformatics RA candidates.

rlbase

RLBase: A database of R-loops and R-loop-mapping experiments

rlbase-data

Protocol for building/updating RLBase

rlhub

ExperimentHub for accessing RLBase data

rloop-qc-meta-analysis-miller-2022

Generates figures for "Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions"

rlpipes

RLPipes: A standardized R-loop-mapping pipeline.

rlseq

An analysis package for R-loop mapping data

rlsuite-paper-miller-2022

Code used to generate figures in the RLSuite paper

s3norm

An normalization method that can normalize high signals without inflate the background noise.

server-side-utilities

Helper functions for server-side operations