bjoelle Goto Github PK

beast2

Bayesian Evolutionary Analysis by Sampling Trees

bfd_snapper_tutorial

bjoelle.github.io

Personal page of Joëlle Barido-Sottani, built from the academicpages template.

cban

releases of beast2 packaged zip files in a reliable location

clads-tutorial

Tutorial on the ClaDS package for the Taming the BEAST website

disparitybias

evophylo

A package to perform automated morphological character partitioning for phylogenetic analyses and analyze macroevolutionary parameter outputs from clock (time-calibrated) Bayesian inference analyses.

fbd-tutorial

Dating Species Divergences with the Fossilized Birth-Death Process

fossilsim_si

Supplementary materials for "FossilSim: an R package for simulating fossil occurrence data under mechanistic models of preservation and recovery"

mariage_hj

msbd-tutorial

poorly_dated_fossils_si

Supplementary materials for "Estimating the age of poorly dated fossil specimens and deposits using a total-evidence approach and the fossilized birth-death process".

revbayes

sampled-ancestors

This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors

stratigraphic_age_uncertainty_si

Supplementary materials for "Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth-death process"

substitution-model-averaging

A tutorial using bModelTest

tree_inference_age_uncertainty_si

tutorial_troubleshooting

Post-processing and improving performance