link error on ubuntu 13.10 with apt-get installed libadolc2/libadolc-dev

[rhr]

link error on ubuntu 13.10 with apt-get installed libadolc2/libadolc-dev

[wrightaprilm]

I was also having this issue. Double check your Makefule. Mine had usr/lib64 and was therefore looking in the wrong place. When I edited this to usr/lib, I was off to the races!

[blackrim]

Thanks, yes that could be it. I may need to change that to discover it.
Installed 14.04 to start debuging

On Sun, May 11, 2014 at 3:40 PM, April Wright [email protected]:

I'm was also having this issue. Double check your Makefule. Mine had
usr/lib64 and was therefore looking in the wrong place. When I edited this
to usr/lib, I was off to the races!

—
Reply to this email directly or view it on GitHubhttps://github.com//issues/7#issuecomment-42780645
.

[rhr]

Actually I think the issue is that libadolc from the repos isn't compiled with mpi. Also, recent versions of adolc don't compile against openmpi on linux - I had to use an older version (2.1 I think) and install it manually. So I guess this can be closed.

[wrightaprilm]

Hmm. I might have to try this solution, Rick. I've got treePL compiled and functional, but I'm running into an issue. I'm replicating a published analysis (4.1k taxa, 13k sites) with 6 calibrations. I'm running into my init vlaues == LARGE.
As far as I can see, this could be 1) an issue related to my wonky compile or 2) some sort of number of taxa-by-sites-by-constraints problem that actually is resulting in the initial values being what they are.

Do you have a gut feeling about for what's up there, Stephen?