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aiostream

Generator-based operators for asynchronous iteration

bioconda-recipes

Conda recipes for the bioconda channel.

biopython

My fork to test things with biopython.

blaiseli.github.io

data_exploration

Some data exploration

deeptools

Tools to process and analyze deep sequencing data.

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

fastq-tools

Small utilities for working with fastq sequence files.

fastx.jl

Parse and process FASTA and FASTQ formatted files of biological sequences.

gip

Genome Instability Pipeline

hmmer

HMMER: biological sequence analysis using profile HMMs

hpc-python

HPC Python lesson materials

learnxinyminutes-docs

Code documentation written as code! How novel and totally my idea!

ngslib

Next Generation Sequencing libraries in Python

p4-phylogenetics

A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution

plotnine

A grammar of graphics for Python

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pygatb

Python3 wrapper for GATB-Core.

r_install_notes

ribodiff

RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

seaborn

Statistical data visualization using matplotlib

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

staythefuckhome

The #StayTheFuckHome Website

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings