Name: Biomedical Knowledge Engineering Group
Type: Organization
Bio: Older legacy organization for Knowledge Engineering work by Gully Burns at the Information Sciences Institute (USC). See @GullyBurns
Location: Information Sciences Institute, Marina del Rey
Blog: http://bmkeg.github.io
Biomedical Knowledge Engineering Group's Projects
A Python library for mapping AMRs to linked data formats (such as RDF and JSON-LD). This work is heavily derived from Naomi Saphra's 'AMRICA' library (https://github.com/nsaphra/AMRICA) and SMATCH
Simple Java applications that provide high-level processing based on KEfED for DARPA's Big Mechanism program.
The BioScholar web application.
The overall project folder for the BioScholar system, described in Russ et al. 2011(http://www.biomedcentral.com/1471-2105/12/351). Version 1.0 of this project is the distribution associated with this paper from our Google Code site(https://code.google.com/p/bioscholar).
The Flex based client for the BioScholar system
Parent project for all Flex project developed within our systems. Primarily for use with VPDMf.
Simple Events for Flex
Utilities for simple text processing within BMKEG tools.
This is where we manage maven dependencies, versions and repositories for all our development projects. This serves as the parent for all subsequent work.
Utilities for bmkeg libraries (includes file, zip, spring and other miscellaneous tools).
GitHub Pages for BMKEG
Website for distribution files hosted on AWS
Python scripts to run evidence extraction pipelines from text annotated with discourse tags from SciDT. Methodology is based on the CoSID frames ('Cycles of Scientific Investigation in Discourse')
Implementations of the Domain Insight Graph (DIG, http://dig.isi.edu) formalism applied to advanced, complex scientific subjects (systems level neuroscience, systems biology, etc.).
A library of flex robotlegs elements to manage citations and documents.
The VPDMf-driven library for all functionality pertaining to literature citations and documents.
Source to www.draw.io
Systems for mapping National Library of Medicine (and other large-scale publishing resources) into Elastic Search Knowledge Bases for indexing and retrieval.
Building scraping tools to aggregate metadata about data science courses using the node horseman library
Visualization of educational resources for the ERuDIte project at ISI
Semantic Web Constructs for ERuDIte
Pron: 'Evil Git'. An idea to implement a system of evaluation on GitHub repositories derived from the BIRN community's framework of evaluation for their software projects (which in turn was derived from the CMMI-DEV 1.3 criteria).
Code for extracting various kinds of frames from experimental descriptions
Machine reading workbench developed by the FRIES consortium of the DARPA Big Mechanism Program
Flex application supporting a machine reading workbench developed by the FRIES consortium of the DARPA Big Mechanism Program
Client elements for a machine reading workbench developed by the FRIES consortium of the DARPA Big Mechanism Program
High-level project for a machine reading workbench developed by the FRIES consortium of the DARPA Big Mechanism Program
Robotlegs Flex components for the Knowledge Engineering from Experimental Design (KEfED) User Interface.