Related Issues (20)
- BUG: Test failure for test_draw_busco_plots_for_render HOT 3
- ENH: allow binning across all samples HOT 4
- ENH: output GFF files from the `eggnog-diamond-search` action
- MAINT: add output description for `eggnog-diamond-search` and `eggnog-annotate`
- ENH: add an action to filter `SampleData[MAGs]` and `FeatureData[MAG]`
- ENH: allow using BUSCOResult during MAG dereplication
- ENH: add action to extract MAG lengths
- ENH: add action to filter `FeatureData[MAG]` HOT 1
- ENH: add action to filter `SampleData[MAGs]` HOT 1
- ENH: add `fetch-hmmer-db` action
- ENH: add ortholog prediction with a HMMER through `search-eggnog-hmmer` action
- MAINT: move partitioning and collating actions to q2-types
- BUG: unclassified MAGs result in empty taxonomic annotations with kraken2-to-mag-features in QIIME 2 2024.5
- ENH: add action to transfer EggNOG annotations from annotated MAGs to the dereplicated MAGs
- ENH: import MAGs while tracking original names from the fasta files
- BUG: `fetch-kaiju-db` action does not work after Kaiju server shutdown
- ENH: add action to build a Kaiju database
- ENH: parallelize classification with Kaiju
- ENH: Wrap fastp in moshpit HOT 1
- BUG: collate_kraken2_outputs returns list
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