Related Issues (20)
- ENH: allow gene prediction from `SampleData[MAGs]`
- ENH: action to build custom Diamond database
- ENH: Fetch NCBI Taxonomy Data (input to `build_custom_diamond_db` action)
- ENH: Fetch `EggnogSequenceTaxa` for `build-eggnog-diamond-db` action
- ENH: allow `SampleData[MAGs]` as input to the `eggnog-diamond-search` action
- ENH: allow `FeatureData[MAG]` as input to the `evaluate-busco` action HOT 2
- ENH: allow `SampleData[MAGs]` as input to the `classify-kraken2` action
- MAINT: clean up the input parameters to `evaluate-busco` HOT 2
- ENH: add a `build-eggnog-diamond-db` action
- Does "NCBITaxonomy Semantic Type PR" break `classify-kaiju`? HOT 1
- MAINT: Add citation to actions that use eggNOG and/or Diamond
- ENH: add `fetch-busco-db` action and update `evaluate-busco` accordingly
- MAINT: use `new_taxdump` in `fetch-ncbi-taxonomy`?
- BUG: bin-contigs-metabat only collects .fa files HOT 2
- MAG workflow requires one or more missing actions to generate a DistanceMatrix HOT 4
- ENH: enable fetching of kraken2's 16S databases
- ENH: Fetching action for HMMER database via Eggnog HOT 1
- ENH: Fetching action for full Diamond database HOT 3
- ENH: add support for other MAG dereplication tools
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from q2-moshpit.