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aging-and-cr-rat-atlas

Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging” (on reviewing)

asd-mutated-brain-organoids

Paulsen, Velasco, Kedaigle, and Pigioni et. al., in submission.

code

notes about child task

copd_metaanalysis

This depository contains key scripts used to analyze the data in the manuscript "Multi-omic meta-analysis identifies functional signatures of airway microbiome in COPD" by Wang et al.

copd_multiomics

This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interaction in Chronic Obstructive Pulmonary Disease'.

coronary_snatac

covid-19_lung_atlas

crc_scrnaseq

endothelial-cell-heterogeneity-and-microglia-regulons-revealed-by-a-pig-cell-landscape-at-single-cel

gwas

Codes for the lettuce resequencing project in 2020

hcl

Tools used in Human Cell Landscape(HCL)

hd

hgda

hu_molcell_2017

"Dissecting cell-type composition and activity-dependent transcriptional state in mammalian brains by massively parallel single-nucleus RNA-Seq"

nhp-covid-19

Single-cell atlas of a non-human primate reveals new pathogenic mechanisms of COVID-19

notebook

pan-metastasis

pancaf

prostatecanceranalysis

sccrc_continuum

scendo_scovar_2020

This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignancies", Regner, et al. 2021

scp

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

scrna-ahca

Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs

text

wes-analysis