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3d-dna

3D de novo assembly (3D DNA) pipeline

agwg-merge

biobambam

Tools for bam file processing

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

caffe-model

Caffe models (imagenet pretrain) and prototxt generator scripts for inception_v3 \ inception_v4 \ inception_resnet \ fractalnet \ resnext

caffe-project-vggnet-resnet-densenet

chlamydomonas_comparative_genomics

chm13

The complete sequence of a human genome

cmplot

📊 Circular and Rectangular Manhattan Plot

cnvcaller

col-cen

Resources for the Col-CEN reference genome assemblies

compare

compare

datasets

Datasets generated by our lab.

deep_learning_object_detection

A paper list of object detection using deep learning.

dotplotly

Generate an interactive dot plot from mummer or minimap alignments

dupgen_finder

A pipeline used to identify different modes of duplicated gene pairs

esatac

Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis

flair

Full-Length Alternative Isoform analysis of RNA

fp-growth

Python implementation of the Frequent Pattern Growth algorithm

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hic_breakfinder

hictrans

HiCtrans is a pipeline to call translocations from Hi-C data

highperformancengs

hight performance & useful tools for working with fastq and bam files

hormon

juicebox

Visualization and analysis software for Hi-C data -

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

lab_info

info and docs for the Wright Lab

liftoff

An accurate GFF3/GTF lift over pipeline

mcscanx2band

meanfield-matlab

MATLAB wrapper for Efficient Inference in Fully Connected CRF