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autofocus

A basic ImageJ/Fiji plugin that take a fluorescent and brightfield confocal time course dataset and output the best focus of the brightfield and a Maximum Intensity Projection of the fluorescent channel.

codowik

now convert dokuwiki engine into a professional wiki with codowik template

colour_deconvolution

demo_monai

Example on how to use Monai

dog

A Jython script for Fiji/ImageJ to perform Difference of Gaussian on fluorescent stack and plot the result

fiji_scripts

fijijythonscripts

Some jython script for Fiji/ImageJ

ijblob

Automatically exported from code.google.com/p/ijblob

imglib2

A generic next-generation Java library for image processing

microirods

A python utility to upload/download/get infor of data stored on an iRODS repository

mist

Microscopy Image Stitching Tool

ml-course-vib-2021

mmqt

Microglia morphology quantification tool

napari-destripe

napari-particle-detection-analysis

Napari plugin to detect particle within cells and perform analysis

napari-segment-anything

Napari plugin of Segment Anything Model (SAM)

napari-tomoslice

a napari plugin for visualising electron cryotomograms

neuralnets

This code implements various useful utilities for training neural networks.

nis2pyr

Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.

python_segmentation_notebooks

qupath

QuPath - Open Source Digital Pathology

simple_neurite_tracer

The ImageJ framework for semi-automated tracing of neurons and tubular structures

swc2tif

w_nuclei-seg-imagej