Comments (3)
Thanks for flagging this. You are right that I currently haven't taken in to account features that will go over the 'origin' of the plasmid. I will have to have a think about how to handle this, as just having the features start and end on the correct places won't work nicely with ggplot.
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Is there a particular reason that the origin point for the plasmid is in this location? I can think of a solution that would basically be changing the origin point for all of the features to be a different location in the plasmid, that doesn't overlap with a feature. I figure this will be the easiest approach. I might not do it for the parsing step, but it might be something that can be done in the plotting stage.
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Thanks Brady for the swift reply.
There is no particular reason for origin being in the middle of a feature - it is just as I got plasmid sequencing results.
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Related Issues (9)
- Error adding gb files from Prokka HOT 3
- Short HOT 1
- Any ideas of how we could plot linear DNA and overlay sequence alignments? HOT 4
- Change in package without detailed documentation; Unable to modify $features to plot relevant ones only HOT 5
- Turn off polar coordinates HOT 2
- Using GFF/GFF3 as input HOT 3
- Changing colours/labels HOT 1
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